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Convergent reductive evolution and host adaptation in Mycoavidus bacterial endosymbionts of Mortierellaceae fungi

https://doi.org/10.1016/j.fgb.2023.103838

Amses, Kevin ; Desiró, Alessandro ; Bryson, Abigail ; Grigoriev, Igor ; Mondo, Stephen ; Lipzen, Anna ; LaButti, Kurt ; Riley, Robert ; Singan, Vasanth ; Salazar-Hamm, Paris ; et al ( December 2023 , Fungal Genetics and Biology)

Free, publicly-accessible full text available December 1, 2024
Increasing access to microfluidics for studying fungi and other branched biological structures

https://doi.org/10.1186/s40694-019-0071-z

Millet, Larry J. ; Aufrecht, Jayde ; Labbé, Jessy ; Uehling, Jessie ; Vilgalys, Rytas ; Estes, Myka L. ; Miquel Guennoc, Cora ; Deveau, Aurélie ; Olsson, Stefan ; Bonito, Gregory ; et al ( December 2019 , Fungal Biology and Biotechnology)

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Microfluidics and Metabolomics Reveal Symbiotic Bacterial–Fungal Interactions Between Mortierella elongata and Burkholderia Include Metabolite Exchange

https://doi.org/10.3389/fmicb.2019.02163

Uehling, Jessie K. ; Entler, Matthew R. ; Meredith, Hannah R. ; Millet, Larry J. ; Timm, Collin M. ; Aufrecht, Jayde A. ; Bonito, Gregory M. ; Engle, Nancy L. ; Labbé, Jessy L. ; Doktycz, Mitchel J. ; et al ( October 2019 , Frontiers in Microbiology)

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Emission Factors of Microbial Volatile Organic Compounds from Environmental Bacteria and Fungi

https://doi.org/10.1021/acs.est.8b00806

Misztal, Pawel K. ; Lymperopoulou, Despoina S. ; Adams, Rachel I. ; Scott, Russell A. ; Lindow, Steven E. ; Bruns, Thomas ; Taylor, John W. ; Uehling, Jessie ; Bonito, Gregory ; Vilgalys, Rytas ; et al ( June 2018 , Environmental Science & Technology)

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Bacterial–fungal interactions: ecology, mechanisms and challenges

https://doi.org/10.1093/femsre/fuy008

Deveau, Aurélie ; Bonito, Gregory ; Uehling, Jessie ; Paoletti, Mathieu ; Becker, Matthias ; Bindschedler, Saskia ; Hacquard, Stéphane ; Hervé, Vincent ; Labbé, Jessy ; Lastovetsky, Olga A ; et al ( February 2018 , FEMS Microbiology Reviews)

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Genome‐based estimates of fungal rDNA copy number variation across phylogenetic scales and ecological lifestyles

https://doi.org/10.1111/mec.14995

Lofgren, Lotus A. ; Uehling, Jessie K. ; Branco, Sara ; Bruns, Thomas D. ; Martin, Francis ; Kennedy, Peter G. ( February 2019 , Molecular Ecology)

Abstract
Ribosomal DNA (rDNA) copy number variation (CNV) has major physiological implications for all organisms, but how it varies for fungi, an ecologically ubiquitous and important group of microorganisms, has yet to be systemically investigated. Here, we examine rDNA CNV using an in silico read depth approach for 91 fungal taxa with sequenced genomes and assess copy number conservation across phylogenetic scales and ecological lifestyles. rDNA copy number varied considerably across fungi, ranging from an estimated 14 to 1,442 copies (mean = 113, median = 82), and copy number similarity was inversely correlated with phylogenetic distance. No correlations were found between rDNA CNV and fungal trophic mode, ecological guild or genome size. Taken together, these results show that like other microorganisms, fungi exhibit substantial variation in rDNA copy number, which is linked to their phylogeny in a scale‐dependent manner.

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